Schema for miRBase & miRTarBase - miRNA information provided by miRBase and miRTarBase |
|---|
| |
Database: ARS_UCD_addY Primary Table: miRBase_miRTarBase Data last updated: 2019-01-06
Big Bed File: /gbdb/ARS_UCD_addY/miRNA/bta.ARS_UCD_addY.miRNA.bb
Item Count: 1,136
Format description: miRNA information provieded by miRBase and miRTarBase
| field | example | description |
|---|
| chrom | 1 | Reference sequence chromosome or scaffold (ARS_UCD_addY:GCA_002263795.2,GCA_000003205.6) | | chromStart | 78661457 | Start position in chromosome | | chromEnd | 78661543 | End position in chromosome | | name | bta-miR-28 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | - | + or - for strand | | thickStart | 78661508 | Start of where display should be thick (start codon) | | thickEnd | 78661530 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of exon | | blockSizes | 86, | Comma separated list of exon sizes | | chromStarts | 0, | Start positions relative to chromStart | | Description | null | miRNA Description |
|
| |
|
|
|
Sample Rows
|
|---|
| |
| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | Description |
|---|
| 1 | 78661457 | 78661543 | bta-miR-28 | 0 | - | 78661508 | 78661530 | 0 | 1 | 86, | 0, | null |
| 1 | 80280614 | 80280695 | bta-miR-2285k | 0 | - | 80280624 | 80280645 | 0 | 1 | 81, | 0, | null |
| 1 | 80470558 | 80470663 | bta-miR-1248 | 0 | - | 80470633 | 80470660 | 0 | 1 | 105, | 0, | null |
| 1 | 82514653 | 82514729 | bta-miR-2284y | 0 | - | 82514698 | 82514719 | 0 | 1 | 76, | 0, | null |
| 1 | 82934065 | 82934151 | bta-miR-1224 | 0 | - | 82934130 | 82934151 | 0 | 1 | 86, | 0, | null |
| 1 | 98873840 | 98873935 | bta-miR-551b | 0 | - | 98873854 | 98873876 | 0 | 1 | 95, | 0, | null |
| 1 | 107073621 | 107073714 | bta-miR-16b | 0 | - | 107073677 | 107073698 | 0 | 1 | 93, | 0, | null |
| 1 | 107073764 | 107073862 | bta-miR-15b | 0 | - | 107073821 | 107073843 | 0 | 1 | 98, | 0, | TargetGene:SLC30A4,FASN,BTN1A1,FOS,ADRB2,UBE2Q1,IL6,IL10,IL10RB,IL18,LYZ,TNF,IL8,FGF7,NOB1,IL10RA,ACSL5,TFPI2,HSPA8,ARRDC4,PPAP2 ... |
| 1 | 115884604 | 115884677 | bta-miR-1246 | 0 | + | 115884614 | 115884633 | 0 | 1 | 73, | 0, | null |
| 1 | 122302966 | 122303028 | bta-miR-2285ch | 0 | + | 122303006 | 122303028 | 0 | 1 | 62, | 0, | null |
|
| |
|
|
|