Schema for Chromatin State15 (expanded track) - Chromatin state calculated by ChromHMM
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Database: ARS_UCD_addY Primary Table: Adipose_adult_15 Row Count: 465   Data last updated: 2021-08-12
field | example | SQL type | info |
bin | 0 | smallint(5) unsigned | range |
chrom | 1 | varchar(255) | values |
chromStart | 0 | int(10) unsigned | range |
chromEnd | 158534000 | int(10) unsigned | range |
name | 1_OpenChromatin | varchar(255) | values |
score | 0 | int(10) unsigned | range |
strand | . | char(1) | values |
thickStart | 135800 | int(10) unsigned | range |
thickEnd | 158534000 | int(10) unsigned | range |
itemRgb | 13470869 | int(10) unsigned | range |
blockCount | 6799 | int(10) unsigned | range |
blockSizes | 0,200,200,400,200,400,1000,... | longblob | |
chromStarts | 0,135800,138200,139000,2094... | longblob | |
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Sample Rows
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bin | chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | itemRgb | blockCount | blockSizes | chromStarts |
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0 | 1 | 0 | 158534000 | 1_OpenChromatin | 0 | . | 135800 | 158534000 | 205,140,149 | 6799 | 0,200,200,400,200,400,1000,1600,1000,400,800,800,200,1200,1000,600,400,400,400,14200,15800,400,1400,800,600,800,200,200,400,1600 ... | 0,135800,138200,139000,209400,211200,234800,240800,242600,245000,247200,249000,258400,261800,266200,273800,286400,288200,292200, ... |
0 | 1 | 0 | 158534000 | 2_ActiveElement | 0 | . | 884400 | 158534000 | 255,212,128 | 1831 | 0,800,800,800,200,200,1000,800,200,400,800,400,1000,400,1600,200,200,200,800,600,200,200,1200,600,400,1200,800,200,400,200,600,8 ... | 0,884400,897400,919200,959400,960200,968200,1151600,1165800,1175600,1235600,1286200,1291800,1397400,1398800,1400800,1403600,1408 ... |
0 | 1 | 0 | 158534000 | 3_ActiveTSS | 0 | . | 881600 | 158534000 | 255,48,48 | 668 | 0,1600,600,400,1400,600,1000,1000,400,1400,1200,800,400,200,2600,1400,1800,1000,1200,400,400,800,3000,1800,600,1400,1600,400,400 ... | 0,881600,990600,1009800,1117600,1320800,1397800,1401200,1402400,1454800,1587000,1643200,1876600,1907000,1907600,1943400,1984600, ... |
0 | 1 | 0 | 158534000 | 4_ActivePromoter | 0 | . | 881200 | 158534000 | 255,215,0 | 1002 | 0,400,800,200,200,200,200,200,200,200,200,1400,200,200,200,400,200,200,1200,400,400,400,200,1800,400,1200,400,200,400,200,200,40 ... | 0,881200,883200,990400,991200,1056400,1117400,1119000,1321400,1401000,1402200,1453400,1586800,1588200,1643000,1644000,1876400,18 ... |
0 | 1 | 0 | 158534000 | 5_Inactive/WeakPoisedPromoter | 0 | . | 777800 | 158534000 | 255,248,250 | 392 | 0,1000,3400,4400,3000,1200,2400,4400,7200,5200,800,800,2400,2000,5400,5600,9400,4600,200,22800,6400,600,14600,5200,2200,9600,200 ... | 0,777800,1208400,1297200,1450400,1585600,2829600,3082600,3380200,3621800,3968800,4063800,4189600,4194000,4247400,4268600,4306800 ... |
0 | 1 | 0 | 158534000 | 6_PrimedEnhancer | 0 | . | 539200 | 158534000 | 224,102,255 | 590 | 0,200,400,600,400,400,600,200,1200,1000,800,600,200,200,200,200,400,1800,200,400,600,600,1800,200,400,400,600,600,200,200,200,40 ... | 0,539200,908600,934600,1341800,1358600,1584800,1588400,1621800,1686200,2006600,2025400,2045800,2048400,3023800,3211400,3232800,3 ... |
0 | 1 | 0 | 158534000 | 7_ActiveEnhancer | 0 | . | 1167200 | 158534000 | 148,0,211 | 210 | 0,400,400,400,1400,1000,600,400,400,200,200,200,200,600,600,600,400,600,400,600,400,1000,400,200,600,400,400,600,1000,800,1400,8 ... | 0,1167200,1728000,1840800,2080000,2122800,2292600,2315200,3515200,3830800,4253400,7662600,10265000,19616200,20210400,42160200,44 ... |
0 | 1 | 0 | 158534000 | 8_WeakEnhancer | 0 | . | 884000 | 158534000 | 255,250,255 | 3882 | 0,400,1800,400,1600,1000,400,600,1000,5200,600,200,2600,200,1200,200,200,1800,1600,1400,200,1200,800,1400,5200,2800,200,600,600, ... | 0,884000,895600,898200,917600,920000,935200,941000,945000,954200,959600,960400,965600,969200,989200,991400,1056200,1056800,11500 ... |
0 | 1 | 0 | 158534000 | 9_PoisedTSS/Promoter | 0 | . | 1056600 | 158534000 | 238,44,44 | 134 | 0,200,800,3000,600,400,400,1000,800,800,200,800,400,400,1200,800,1000,200,200,600,1000,200,800,400,1600,1400,200,400,2400,1200,4 ... | 0,1056600,1320000,3079200,3627200,4192200,6042800,9441600,9583800,9869400,15883000,19501800,24412600,31675600,35122400,35867000, ... |
0 | 1 | 0 | 158534000 | 10_PolyCombRepressed | 0 | . | 346200 | 158534000 | 209,238,238 | 1219 | 0,400,200,400,800,200,1200,1200,400,600,400,2400,600,2800,200,2200,2000,2200,600,1000,1400,3800,2000,2800,400,1800,1200,400,200, ... | 0,346200,347800,581800,588800,592800,624400,626600,670400,780200,787800,817400,821400,847400,851000,853400,860400,1022400,103300 ... |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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Chromatin State15 (expanded track) (chromatinStateExpanded) Track Description
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Description
This track displays the predicted chromatin states across different tissues.
Display Conventions and Configuration
The colours used for each of the chromatin states are as follows
State |
DESCRIPTION |
COLOR |
COLOR CODE |
1 |
Open chromatin |
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205,140,149 |
2 |
Active element |
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255,212,128 |
3 |
Active TSS |
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255,48,48 |
4 |
Active promoter |
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255,215,0 |
5 |
Inactive/Weak Poised Promoter |
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255,248,250 |
6 |
Primed Enhancer |
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224,102,255 |
7 |
Active Enhancer |
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148,0,211 |
8 |
Weak Enhancer |
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255,250,255 |
9 |
Poised TSS/Promoter |
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238,44,44 |
10 |
PolyComb Repressed |
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209,238,238 |
11 |
Weak Repressed PolyComb |
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245,255,250 |
12 |
Poised Enhancer |
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238,210,238 |
13 |
Poised Enhancer |
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250,250,250 |
14 |
Insulator/Weak Primed Enhancer |
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119,136,153 |
15 |
Insulator |
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125,136,153 |
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