Schema for Chromatin State15 (expanded track) - Chromatin state calculated by ChromHMM
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Database: ARS_UCD_addY Primary Table: Lung_adult_15 Row Count: 465   Data last updated: 2021-08-12
field | example | SQL type | info |
bin | 0 | smallint(5) unsigned | range |
chrom | 1 | varchar(255) | values |
chromStart | 0 | int(10) unsigned | range |
chromEnd | 158534000 | int(10) unsigned | range |
name | 1_OpenChromatin | varchar(255) | values |
score | 0 | int(10) unsigned | range |
strand | . | char(1) | values |
thickStart | 138000 | int(10) unsigned | range |
thickEnd | 158534000 | int(10) unsigned | range |
itemRgb | 13470869 | int(10) unsigned | range |
blockCount | 7248 | int(10) unsigned | range |
blockSizes | 0,200,200,800,200,400,200,4... | longblob | |
chromStarts | 0,138000,139200,211000,2172... | longblob | |
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Sample Rows
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bin | chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | itemRgb | blockCount | blockSizes | chromStarts |
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0 | 1 | 0 | 158534000 | 1_OpenChromatin | 0 | . | 138000 | 158534000 | 205,140,149 | 7248 | 0,200,200,800,200,400,200,400,800,200,1400,600,800,6600,8600,13800,800,800,1400,600,600,400,200,400,600,800,200,800,1600,800,800 ... | 0,138000,139200,211000,217200,218200,234000,241800,247200,266400,273800,278400,292200,297800,305200,314000,331000,334000,335600, ... |
0 | 1 | 0 | 158534000 | 2_ActiveElement | 0 | . | 138200 | 158534000 | 255,212,128 | 2157 | 0,200,200,1400,400,200,400,600,200,800,2000,600,400,200,400,1800,400,1200,1600,200,1800,400,200,400,200,1200,1400,800,600,1000,1 ... | 0,138200,139000,500000,670400,838000,887800,919000,935600,945000,955600,958800,960200,961000,962000,968600,992000,1008600,101900 ... |
0 | 1 | 0 | 158534000 | 3_ActiveTSS | 0 | . | 881200 | 158534000 | 255,48,48 | 965 | 0,2000,600,400,400,1000,400,1400,200,1600,1400,2800,1000,600,1200,3400,800,1600,2200,1800,2400,4200,400,400,3400,600,400,1400,10 ... | 0,881200,888200,919600,934400,990400,1009800,1117600,1321000,1397400,1401000,1453600,1587400,1637400,1643000,1907000,1929400,194 ... |
0 | 1 | 0 | 158534000 | 4_ActivePromoter | 0 | . | 883200 | 158534000 | 255,215,0 | 909 | 0,400,200,200,200,200,400,400,600,400,200,1000,200,1600,400,400,200,600,1600,200,600,400,400,200,200,1200,400,400,800,400,1000,8 ... | 0,883200,991400,1117400,1119000,1453400,1644200,1721000,1905800,1910400,1929200,1942400,1945000,1982800,1986600,2028200,2046000, ... |
0 | 1 | 0 | 158534000 | 5_Inactive/WeakPoisedPromoter | 0 | . | 1448200 | 158534000 | 255,248,250 | 461 | 0,5200,400,3600,200,7200,200,18200,3400,1000,3000,400,800,11200,1600,200,1200,4600,200,200,200,14000,2000,200,6400,3200,3000,240 ... | 0,1448200,1601000,1715000,1863200,1863800,1911400,1954600,2060200,2792200,2823600,3764000,3765000,3766400,3996800,6042600,685060 ... |
0 | 1 | 0 | 158534000 | 6_PrimedEnhancer | 0 | . | 883600 | 158534000 | 224,102,255 | 2177 | 0,800,600,800,200,1400,400,1000,600,400,800,1200,400,3200,800,400,200,600,600,200,800,1200,1000,400,600,600,1200,600,600,200,200 ... | 0,883600,892400,931400,1117200,1119200,1388600,1427200,1434800,1558200,1573200,1599000,1603800,1607200,1615200,1644600,1661000,1 ... |
0 | 1 | 0 | 158534000 | 7_ActiveEnhancer | 0 | . | 888800 | 158534000 | 148,0,211 | 1591 | 0,600,1000,800,200,3000,1400,1800,200,800,200,3000,600,800,2000,4600,1800,800,1400,400,1200,2000,1800,800,200,2000,200,600,200,1 ... | 0,888800,932200,934800,959400,965600,970600,988600,991600,1399000,1400800,1604200,1610400,1660200,1698000,1726800,1733200,174240 ... |
0 | 1 | 0 | 158534000 | 8_WeakEnhancer | 0 | . | 138400 | 158534000 | 255,250,255 | 3641 | 0,600,1400,1200,1800,1000,400,1200,400,400,3200,1000,1200,600,400,800,3200,200,400,800,200,800,200,200,600,200,1200,800,400,3200 ... | 0,138400,670800,679600,836200,889400,920000,933200,935800,944600,945800,954600,957600,959600,960600,961200,962400,970400,972000, ... |
0 | 1 | 0 | 158534000 | 9_PoisedTSS/Promoter | 0 | . | 625600 | 158534000 | 238,44,44 | 176 | 0,600,1800,1000,400,3600,400,600,600,400,600,1400,600,1600,600,400,800,1600,400,400,2000,800,1400,200,600,800,800,600,600,2200,3 ... | 0,625600,819800,1320000,2391600,3627200,3967000,3967600,4192000,6042800,9442200,19501400,37117000,40973600,46389000,49929600,568 ... |
0 | 1 | 0 | 158534000 | 10_PolyCombRepressed | 0 | . | 347200 | 158534000 | 209,238,238 | 1489 | 0,800,600,1000,1200,600,800,2600,2400,7000,1400,6400,2400,1000,200,800,2000,3600,2400,3000,4000,2000,800,400,1000,800,2400,1800, ... | 0,347200,357600,624400,626600,743200,790600,799200,816800,822200,834400,838800,849600,854400,855600,857600,1014200,1021600,10318 ... |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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Chromatin State15 (expanded track) (chromatinStateExpanded) Track Description
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Description
This track displays the predicted chromatin states across different tissues.
Display Conventions and Configuration
The colours used for each of the chromatin states are as follows
State |
DESCRIPTION |
COLOR |
COLOR CODE |
1 |
Open chromatin |
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205,140,149 |
2 |
Active element |
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255,212,128 |
3 |
Active TSS |
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255,48,48 |
4 |
Active promoter |
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255,215,0 |
5 |
Inactive/Weak Poised Promoter |
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255,248,250 |
6 |
Primed Enhancer |
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224,102,255 |
7 |
Active Enhancer |
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148,0,211 |
8 |
Weak Enhancer |
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255,250,255 |
9 |
Poised TSS/Promoter |
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238,44,44 |
10 |
PolyComb Repressed |
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209,238,238 |
11 |
Weak Repressed PolyComb |
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245,255,250 |
12 |
Poised Enhancer |
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238,210,238 |
13 |
Poised Enhancer |
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250,250,250 |
14 |
Insulator/Weak Primed Enhancer |
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119,136,153 |
15 |
Insulator |
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125,136,153 |
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