Schema for Chromatin State15 (expanded track) - Chromatin state calculated by ChromHMM
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Database: ARS_UCD_addY Primary Table: Rumen_epithelial_primary_cells_2weeks_15 Row Count: 464   Data last updated: 2021-08-12
field | example | SQL type | info |
bin | 0 | smallint(5) unsigned | range |
chrom | 1 | varchar(255) | values |
chromStart | 0 | int(10) unsigned | range |
chromEnd | 158534000 | int(10) unsigned | range |
name | 1_OpenChromatin | varchar(255) | values |
score | 0 | int(10) unsigned | range |
strand | . | char(1) | values |
thickStart | 145000 | int(10) unsigned | range |
thickEnd | 158534000 | int(10) unsigned | range |
itemRgb | 13470869 | int(10) unsigned | range |
blockCount | 2498 | int(10) unsigned | range |
blockSizes | 0,400,600,800,800,200,400,3... | longblob | |
chromStarts | 0,145000,329800,332800,3342... | longblob | |
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Sample Rows
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bin | chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | itemRgb | blockCount | blockSizes | chromStarts |
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0 | 1 | 0 | 158534000 | 1_OpenChromatin | 0 | . | 145000 | 158534000 | 205,140,149 | 2498 | 0,400,600,800,800,200,400,3600,800,400,200,200,2200,800,12800,1400,400,400,400,200,400,400,200,400,800,400,400,400,400,400,200,4 ... | 0,145000,329800,332800,334200,347600,441400,474800,510600,562800,591000,591800,595000,598800,600400,640000,644000,801800,804600, ... |
0 | 1 | 0 | 158534000 | 2_ActiveElement | 0 | . | 990400 | 158534000 | 255,212,128 | 398 | 0,200,600,400,200,400,800,800,200,800,400,1200,600,2000,400,400,800,400,1000,800,1000,400,200,600,600,400,200,200,400,200,800,40 ... | 0,990400,1588000,1779000,2126000,2129400,2158000,2159200,2331600,4021200,5417400,5787800,5888400,6809000,6939000,7134400,7342200 ... |
0 | 1 | 0 | 158534000 | 3_ActiveTSS | 0 | . | 881400 | 158534000 | 255,48,48 | 622 | 0,1600,600,1200,600,1200,800,2800,1400,2000,2200,2600,200,1600,600,2200,1400,1600,200,1600,1600,400,2200,400,2200,600,3000,2400, ... | 0,881400,990600,1117800,1454800,1586800,1643200,1907600,1943400,1984600,2026200,2046000,2126200,2127800,2129800,2217400,2313200, ... |
0 | 1 | 0 | 158534000 | 4_ActivePromoter | 0 | . | 880800 | 158534000 | 255,215,0 | 818 | 0,600,1600,1600,1200,400,1600,200,1800,800,400,1200,800,2200,200,400,400,200,200,1400,400,1800,600,800,200,200,200,1600,200,200, ... | 0,880800,883000,991200,1116600,1119000,1453200,1643000,1644000,1906800,1910400,1942200,1944800,1982400,1986600,2025800,2028400,2 ... |
0 | 1 | 0 | 158534000 | 5_Inactive/WeakPoisedPromoter | 0 | . | 969200 | 158534000 | 255,248,250 | 320 | 0,1600,1600,2400,3000,2800,3600,4400,400,3000,1000,4000,400,400,1800,6600,800,800,2600,1000,2400,2800,2000,400,400,3400,400,1200 ... | 0,969200,993200,1450600,1856600,2309600,2350600,2373000,2390800,2830400,3542800,3768000,3772400,6842400,7013200,7175800,7185600, ... |
0 | 1 | 0 | 158534000 | 6_PrimedEnhancer | 0 | . | 955200 | 158534000 | 224,102,255 | 3333 | 0,1800,1800,3000,600,3000,400,1200,2000,200,1400,1400,2200,200,2200,600,2200,600,1400,2600,1000,1800,800,800,800,2400,3200,1400, ... | 0,955200,959200,966200,982400,986000,992800,1045600,1400200,1402800,1425200,1439000,1448400,1453000,1497000,1586200,1604200,1610 ... |
0 | 1 | 0 | 158534000 | 7_ActiveEnhancer | 0 | . | 944600 | 158534000 | 148,0,211 | 1389 | 0,2200,1600,400,2600,600,1800,1400,1600,3800,400,1400,600,200,2400,800,400,400,1400,1000,800,1000,400,1600,200,800,600,200,4000, ... | 0,944600,947200,965800,1397600,1402200,1621600,1711000,1728000,1851600,1862000,1905000,1929400,1986800,2006600,2052400,2196800,2 ... |
0 | 1 | 0 | 158534000 | 8_WeakEnhancer | 0 | . | 944000 | 158534000 | 255,250,255 | 1184 | 0,600,400,2400,200,1400,1200,1000,200,200,800,1000,200,400,800,1400,600,400,1200,800,600,200,1000,200,200,200,400,200,1000,400,2 ... | 0,944000,946800,948800,965600,989000,1777800,1779400,1810200,1929200,1964000,2009000,2053200,2125600,2157200,2195400,2226000,233 ... |
0 | 1 | 0 | 158534000 | 9_PoisedTSS/Promoter | 0 | . | 1455400 | 158534000 | 238,44,44 | 31 | 0,600,1200,800,400,800,1000,200,1800,400,200,1000,400,600,200,200,1600,200,800,200,400,600,600,1200,400,200,800,400,2200,800,1 | 0,1455400,3080600,9442000,9582400,9583800,40973600,43024200,80345000,81983800,82590000,82918400,94099600,97350600,97686800,11701 ... |
0 | 1 | 0 | 158534000 | 10_PolyCombRepressed | 0 | . | 346600 | 158534000 | 209,238,238 | 1236 | 0,600,1000,1400,6800,600,3800,5200,200,1000,2800,2400,1200,600,800,1400,800,1600,3200,200,1200,2600,1800,600,600,1600,400,2200,1 ... | 0,346600,593600,625400,817400,1033000,1034000,1039000,1071600,1120600,1138400,1151000,1166000,1235600,1258000,1318400,1321400,14 ... |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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Chromatin State15 (expanded track) (chromatinStateExpanded) Track Description
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Description
This track displays the predicted chromatin states across different tissues.
Display Conventions and Configuration
The colours used for each of the chromatin states are as follows
State |
DESCRIPTION |
COLOR |
COLOR CODE |
1 |
Open chromatin |
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205,140,149 |
2 |
Active element |
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255,212,128 |
3 |
Active TSS |
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255,48,48 |
4 |
Active promoter |
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255,215,0 |
5 |
Inactive/Weak Poised Promoter |
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255,248,250 |
6 |
Primed Enhancer |
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224,102,255 |
7 |
Active Enhancer |
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148,0,211 |
8 |
Weak Enhancer |
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255,250,255 |
9 |
Poised TSS/Promoter |
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238,44,44 |
10 |
PolyComb Repressed |
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209,238,238 |
11 |
Weak Repressed PolyComb |
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245,255,250 |
12 |
Poised Enhancer |
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238,210,238 |
13 |
Poised Enhancer |
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250,250,250 |
14 |
Insulator/Weak Primed Enhancer |
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119,136,153 |
15 |
Insulator |
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125,136,153 |
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