Schema for Chromatin State15 (expanded track) - Chromatin state calculated by ChromHMM
|
|
Database: ARS_UCD_addY Primary Table: Skeletal_muscle_adult_15 Row Count: 463   Data last updated: 2021-08-12
field | example | SQL type | info |
bin | 0 | smallint(5) unsigned | range |
chrom | 1 | varchar(255) | values |
chromStart | 0 | int(10) unsigned | range |
chromEnd | 158534000 | int(10) unsigned | range |
name | 1_OpenChromatin | varchar(255) | values |
score | 0 | int(10) unsigned | range |
strand | . | char(1) | values |
thickStart | 238400 | int(10) unsigned | range |
thickEnd | 158534000 | int(10) unsigned | range |
itemRgb | 13470869 | int(10) unsigned | range |
blockCount | 4640 | int(10) unsigned | range |
blockSizes | 0,200,400,2400,1600,200,200... | longblob | |
chromStarts | 0,238400,247400,298600,3028... | longblob | |
|
| |
|
|
Sample Rows
|
|
bin | chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | itemRgb | blockCount | blockSizes | chromStarts |
---|
0 | 1 | 0 | 158534000 | 1_OpenChromatin | 0 | . | 238400 | 158534000 | 205,140,149 | 4640 | 0,200,400,2400,1600,200,200,1200,1400,800,600,600,400,200,800,400,600,2800,1000,600,200,3000,1200,2000,200,8000,800,800,200,800, ... | 0,238400,247400,298600,302800,305600,306200,320600,323600,325800,327000,331000,334000,336400,441200,451800,453000,454400,458200, ... |
0 | 1 | 0 | 158534000 | 2_ActiveElement | 0 | . | 321800 | 158534000 | 255,212,128 | 1255 | 0,200,400,400,400,2200,400,600,800,1000,200,200,600,200,600,1400,1000,200,600,1400,1200,800,400,200,600,800,400,400,600,200,400, ... | 0,321800,819600,897800,900000,919200,945200,947800,948800,950200,953200,1154000,1398600,1456200,1602000,1604200,1728400,1874400, ... |
0 | 1 | 0 | 158534000 | 3_ActiveTSS | 0 | . | 951200 | 158534000 | 255,48,48 | 78 | 0,200,600,1000,600,200,200,200,400,400,600,400,400,1600,200,800,200,400,400,1000,200,200,400,600,200,400,400,200,600,600,200,800 ... | 0,951200,42917800,44398400,44400600,44401600,44412800,44413200,50627600,52663000,59024200,59280400,64387200,64414000,64992800,66 ... |
0 | 1 | 0 | 158534000 | 4_ActivePromoter | 0 | . | 823800 | 158534000 | 255,215,0 | 441 | 0,600,400,400,400,800,400,200,400,200,800,200,600,200,200,400,200,200,800,200,800,200,200,1600,200,400,400,200,200,600,200,200,4 ... | 0,823800,951400,991200,1603000,2130800,2152800,2346600,2588200,2785800,2830200,2842800,3086000,3645000,3972400,4112600,5165200,9 ... |
0 | 1 | 0 | 158534000 | 5_Inactive/WeakPoisedPromoter | 0 | . | 208600 | 158534000 | 255,248,250 | 4359 | 0,20200,31200,10000,93400,9800,31000,4000,25200,21000,28400,11800,10800,7200,15400,109000,31600,24200,3600,4200,8600,19200,2600, ... | 0,208600,247800,336600,347800,442000,479600,511400,515800,541800,563200,613600,626800,651000,661600,708000,824400,857000,884000, ... |
0 | 1 | 0 | 158534000 | 6_PrimedEnhancer | 0 | . | 208400 | 158534000 | 224,102,255 | 488 | 0,200,200,200,200,200,200,200,400,2000,600,400,800,400,600,1200,600,400,400,200,200,600,200,1400,400,200,1400,2800,400,200,200,8 ... | 0,208400,323400,952000,1408600,1409000,1645000,1720800,1805000,1981000,2079800,2117800,2262200,2270600,2295200,2346800,2588600,3 ... |
0 | 1 | 0 | 158534000 | 7_ActiveEnhancer | 0 | . | 1980600 | 158534000 | 148,0,211 | 66 | 0,400,200,400,600,200,600,400,1200,600,400,200,400,800,1200,800,1400,1200,200,1000,400,600,200,200,400,600,200,400,200,200,200,2 ... | 0,1980600,2391600,2995200,3065600,10314400,20578400,20808800,36136800,42157200,44148000,50437000,50478000,52771800,59062800,5908 ... |
0 | 1 | 0 | 158534000 | 8_WeakEnhancer | 0 | . | 322000 | 158534000 | 255,250,255 | 1771 | 0,1400,2600,2200,200,200,200,200,400,2200,400,600,200,1000,1200,1200,400,800,400,800,1000,3600,3000,1000,800,400,2400,2800,4800, ... | 0,322000,817000,821600,897400,898200,899200,899800,921400,945600,948400,949600,951800,952200,957600,989200,991600,1400400,160260 ... |
0 | 1 | 0 | 158534000 | 9_PoisedTSS/Promoter | 0 | . | 346800 | 158534000 | 238,44,44 | 982 | 0,1000,1000,1200,2600,400,400,400,400,2000,1600,800,800,1600,2600,1400,600,600,1600,400,200,200,3600,2200,3000,2200,2000,200,300 ... | 0,346800,625600,820000,881200,990800,1009800,1040400,1056400,1117200,1319800,1350400,1397800,1401200,1453600,1587000,1622200,163 ... |
0 | 1 | 0 | 158534000 | 10_PolyCombRepressed | 0 | . | 1623000 | 158534000 | 209,238,238 | 141 | 0,200,400,800,200,600,1200,1000,400,800,200,1200,200,400,600,800,400,800,1200,600,600,400,200,200,200,400,1600,800,1400,800,200, ... | 0,1623000,2312200,2460200,2491800,3084600,3320800,3633400,4175600,4194800,4356000,4370000,7005800,9581200,10916600,20732600,2201 ... |
|
Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
| |
|
|
Chromatin State15 (expanded track) (chromatinStateExpanded) Track Description
|
|
Description
This track displays the predicted chromatin states across different tissues.
Display Conventions and Configuration
The colours used for each of the chromatin states are as follows
State |
DESCRIPTION |
COLOR |
COLOR CODE |
1 |
Open chromatin |
|
205,140,149 |
2 |
Active element |
|
255,212,128 |
3 |
Active TSS |
|
255,48,48 |
4 |
Active promoter |
|
255,215,0 |
5 |
Inactive/Weak Poised Promoter |
|
255,248,250 |
6 |
Primed Enhancer |
|
224,102,255 |
7 |
Active Enhancer |
|
148,0,211 |
8 |
Weak Enhancer |
|
255,250,255 |
9 |
Poised TSS/Promoter |
|
238,44,44 |
10 |
PolyComb Repressed |
|
209,238,238 |
11 |
Weak Repressed PolyComb |
|
245,255,250 |
12 |
Poised Enhancer |
|
238,210,238 |
13 |
Poised Enhancer |
|
250,250,250 |
14 |
Insulator/Weak Primed Enhancer |
|
119,136,153 |
15 |
Insulator |
|
125,136,153 |
| |
|
|
|