Schema for SNPs (928) - SNPs for 928 chicken samples

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Schema for SNPs (928) - SNPs for 928 chicken samples

Database: GRCg7b Primary Table: SNPs Data last updated: 2021-10-20
Big Bed File: /gbdb/GRCg7b/SNP_indel/Chicken_SNP.bb
Item Count: 22,724,894
Format description: SNPs for GRCg7b

field	example	description
`chrom`	1	Reference sequence chromosome or scaffold
`chromStart`	130966280	Start position in chromosome
`chromEnd`	130966281	End position in chromosome
`name`	1:130966281	SNP postion
`allele`	C/G	Allele
`MAF`	0.001	Minor allele frequency
`GRCg6a_Pos`	1:132157664	GRCg6a position
`dbSNP_rsid`	novel	dbSNP rsid

Sample Rows

chrom	chromStart	chromEnd	name	allele	MAF	GRCg6a_Pos	dbSNP_rsid
1	130966280	130966281	1:130966281	C/G	0.001	1:132157664	novel
1	130966339	130966340	1:130966340	C/A	0.004	1:132157723	novel
1	130966428	130966429	1:130966429	C/A	0.001	1:132157812	novel
1	130966434	130966435	1:130966435	T/C	0.001	1:132157818	novel
1	130966481	130966482	1:130966482	C/T	0.038	1:132157865	rs732560804
1	130966520	130966521	1:130966521	C/A	0.037	1:132157904	rs317307115
1	130966545	130966546	1:130966546	G/A	0.001	1:132157929	novel
1	130966605	130966606	1:130966606	A/G	0.385	1:132157989	rs740724836
1	130966609	130966610	1:130966610	T/G	0.101	1:132157993	rs734540963
1	130966632	130966633	1:130966633	A/C	0.385	1:132158016	rs312335800