Schema for gene - gene Name |
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Database: hg38 Primary Table: gene Data last updated: 2021-08-01
Big Bed File: /gbdb/hg38/gene/output.bb
Item Count: 159,322
Format description: bigGenePred gene models
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 166055917 | Start position in chromosome | | chromEnd | 166166755 | End position in chromosome | | name | NM_001320302.1 | Name or ID of item, ideally both human-readable and unique | | score | 0 | Score (0-1000) | | strand | - | + or - for strand | | thickStart | 166060608 | Start of where display should be thick (start codon) | | thickEnd | 166166248 | End of where display should be thick (stop codon) | | reserved | 0 | RGB value (use R,G,B string in input file) | | blockCount | 2 | Number of blocks | | blockSizes | 4746,770, | Comma separated list of block sizes | | chromStarts | 0,110068, | Start positions relative to chromStart | | name2 | FAM78B | Alternative/human readable name | | cdsStartStat | none | enum('none','unk','incmpl','cmpl') | | cdsEndStat | none | enum('none','unk','incmpl','cmpl') | | exonFrames | 2,0, | Exon frame {0,1,2}, or -1 if no frame for exon | | type | | Transcript type | | geneName | NM_001320302.1 | Primary identifier for gene | | geneName2 | FAM78B | Alternative/human-readable gene name | | geneType | | Gene type |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | name2 | cdsStartStat | cdsEndStat | exonFrames | type | geneName | geneName2 | geneType |
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| 1 | 166055917 | 166166755 | NM_001320302.1 | 0 | - | 166060608 | 166166248 | 0 | 2 | 4746,770, | 0,110068, | FAM78B | none | none | 2,0, | | NM_001320302.1 | FAM78B | |
| 1 | 166055917 | 166166755 | NR_135199.1 | 0 | - | 166166755 | 166166755 | 0 | 3 | 4746,932,770, | 0,13914,110068, | FAM78B | none | none | -1,-1,-1, | | NR_135199.1 | FAM78B | |
| 1 | 166057425 | 166166306 | XM_017000418.1 | 0 | - | 166070240 | 166166248 | 0 | 3 | 3238,929,321, | 0,12409,108560, | FAM78B | none | none | -1,2,0, | | XM_017000418.1 | FAM78B | |
| 1 | 166057430 | 166166755 | XM_017000417.1 | 0 | - | 166070240 | 166166248 | 0 | 3 | 3233,5138,770, | 0,8195,108555, | FAM78B | none | none | -1,2,0, | | XM_017000417.1 | FAM78B | |
| 1 | 166060610 | 166091339 | XR_001737762.1 | 0 | + | 166091339 | 166091339 | 0 | 3 | 1946,144,4253, | 0,21994,26476, | LOC105371586 | none | none | -1,-1,-1, | | XR_001737762.1 | LOC105371586 | |
| 1 | 166069298 | 166166755 | NM_001017961.4 | 0 | - | 166070240 | 166166248 | 0 | 2 | 1465,770, | 0,96687, | FAM78B | none | none | 2,0, | | NM_001017961.4 | FAM78B | |
| 1 | 166154742 | 166154798 | NR_030626.1 | 0 | - | 166154798 | 166154798 | 0 | 1 | 56, | 0, | MIR921 | none | none | -1, | | NR_030626.1 | MIR921 | |
| 1 | 166475039 | 166490223 | XR_922240.2 | 0 | - | 166490223 | 166490223 | 0 | 3 | 1165,89,363, | 0,1841,14821, | LOC105371590 | none | none | -1,-1,-1, | | XR_922240.2 | LOC105371590 | |
| 1 | 166603915 | 166625238 | NR_002925.2 | 0 | + | 166625238 | 166625238 | 0 | 7 | 69,98,144,189,163,143,558, | 0,844,8544,16883,17954,19728,20765, | FMO9P | none | none | -1,-1,-1,-1,-1,-1,-1, | | NR_002925.2 | FMO9P | |
| 1 | 166839403 | 166856344 | NM_001314014.1 | 0 | + | 166841084 | 166850409 | 0 | 4 | 201,134,1486,3760, | 0,1551,9534,13181, | POGK | none | none | -1,0,1,-1, | | NM_001314014.1 | POGK | |
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