Schema for NCBI Genes - NCBI Gene Predictions |
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Database: panPig Primary Table: gene Data last updated: 2018-01-08
Big Bed File: /gbdb/panPig/gene/pig.bb
Item Count: 81,874
Format description: Genes for pig(Sscrofa11) with Transcript and GeneSymbol
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 183116401 | Start position in chromosome | | chromEnd | 183117027 | End position in chromosome | | name | gene1463 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | + | + or - for strand | | thickStart | 183117027 | Start of where display should be thick (start codon) | | thickEnd | 183117027 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of exon | | blockSizes | 626, | Comma separated list of exon sizes | | chromStarts | 0, | Start positions relative to chromStart | | geneSymbol | LOC100152145 | Gene Symbol | | searchText | gene1463(LOC100152145) | Search Text |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneSymbol | searchText |
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| 1 | 183116401 | 183117027 | gene1463 | 0 | + | 183117027 | 183117027 | 0 | 1 | 626, | 0, | LOC100152145 | gene1463(LOC100152145) |
| 1 | 183316313 | 183364666 | XR_002346935.1 | 0 | - | 183364666 | 183364666 | 0 | 4 | 381,108,139,405, | 0,20558,22237,47948, | LOC110262205 | XR_002346935.1(LOC110262205) |
| 1 | 183354415 | 183364666 | XR_002346936.1 | 0 | - | 183364666 | 183364666 | 0 | 2 | 548,405, | 0,9846, | LOC110262205 | XR_002346936.1(LOC110262205) |
| 1 | 183415988 | 183422525 | XM_005659970.3 | 0 | - | 183416258 | 183418437 | 0 | 4 | 1127,380,125,810, | 0,2076,3481,5727, | BMP4 | XM_005659970.3(BMP4) |
| 1 | 183415988 | 183422853 | XM_021069851.1 | 0 | - | 183416258 | 183422838 | 0 | 4 | 1127,327,125,77, | 0,2076,3481,6788, | BMP4 | XM_021069851.1(BMP4) |
| 1 | 183415988 | 183422884 | XM_005659968.2 | 0 | - | 183416258 | 183418437 | 0 | 4 | 1127,380,125,314, | 0,2076,3481,6582, | BMP4 | XM_005659968.2(BMP4) |
| 1 | 183415988 | 183422888 | XM_021069353.1 | 0 | - | 183416258 | 183418437 | 0 | 3 | 1127,1530,318, | 0,2076,6582, | BMP4 | XM_021069353.1(BMP4) |
| 1 | 183415993 | 183419618 | NM_001101031.2 | 0 | - | 183416258 | 183418437 | 0 | 3 | 1122,380,149, | 0,2071,3476, | BMP4 | NM_001101031.2(BMP4) |
| 1 | 183578379 | 183792458 | XR_301198.3 | 0 | - | 183792458 | 183792458 | 0 | 6 | 61,189,96,161,214,115, | 0,30586,35258,210450,211513,213964, | LOC102167290 | XR_301198.3(LOC102167290) |
| 1 | 183787746 | 183792458 | XR_301199.2 | 0 | - | 183792458 | 183792458 | 0 | 4 | 599,161,214,115, | 0,1083,2146,4597, | LOC102167290 | XR_301199.2(LOC102167290) |
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