Configure Image
 
image width:pixels
label area width:characters
text size:
Show light blue vertical guidelines, or light red vertical window separators in multi-region view
Display labels to the left of items in tracks
Display description above each track
Show track controls under main graphic
Next/previous item navigation
Next/previous exon navigation
Show exon numbers
Enable highlight with drag-and-select (if unchecked, drag-and-select always zooms to selection)

Configure Tracks on UCSC Genome Browser: Btau_5_0_1 Nov. 2015 (Cattle/Btau_5.0.1) (Btau_5_0_1)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Location
GC Percent GC Percent in 5-Base Windows
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI Genes NCBI Gene Predictions
QTL QTL marker from Animal QTL Database
-   Comparative Genomics    
Cons 20 Mammals 20 Mammals conservation by PhastCons
Cons 100 Vertebrates 100 vertebrates conservation by PhastCons
-   Variation and Repeats    
SNPs (432) SNPs for 432 cattle accessions
Indels (432) Indels for 432 cattle accessions
CNVR Bar Haploid Copy Number
SNPs & Haplotype Six core cattle groups are composed of 137 individuals (Display haplotype when visibility is pack/squish)
-   Selection Statistics based on Population Differentiation    
Fst_IN_Other Fst value - Indian indicine vs Other five groups
Fst_CN_Other Fst value - Chinese indicine vs Other five groups
Fst_EA_Other Fst value - East Asian taurine vs Other five groups
Fst_EUA_Other Fst value - Eurasian taurine vs Other five groups
Fst_EUR_Other Fst value - European taurine vs Other five groups
Fst_AFR_Other Fst value - African taurine vs Other five groups
Fst_BIN_BTA Fst value - Bos indicus vs Bos taurus
XP-CLR_IN_Other XP-CLR value - Indian indicine vs Other five groups
XP-CLR_CN_Other XP-CLR value - Chinese indicine vs Other five groups
XP-CLR_EA_Other XP-CLR value - East Asian taurine vs Other five groups
XP-CLR_EUA_Other XP-CLR value - Eurasian taurine vs Other five groups
XP-CLR_EUR_Other XP-CLR value - European taurine vs Other five groups
XP-CLR_AFR_Other XP-CLR value - African taurine vs Other five groups
XP-CLR_BIN_BTA XP-CLR value - Bos indicus vs Bos taurus
-   Selection Statistics based on Linkage Disequilibrium Structure    
iHS_IN iHS value - Indian indicine
iHS_CN iHS value - Chinese indicine
iHS_EA iHS value - East Asian taurine
iHS_EUA iHS value - Eurasian taurine
iHS_EUR iHS value - European taurine
iHS_AFR iHS value - African taurine
iHS_BIN iHS value - Bos indicus
iHS_BTA iHS value - Bos taurus
XPEHH_IN_Other XPEHH value - Indian indicine vs Other five groups
XPEHH_CN_Other XPEHH value - Chinese indicine vs Other five groups
XPEHH_EA_Other XPEHH value - East Asian taurine vs Other five groups
XPEHH_EUA_Other XPEHH value - Eurasian taurine vs Other five groups
XPEHH_EUR_Other XPEHH value - European taurine vs Other five groups
XPEHH_AFR_Other XPEHH value - African taurine vs Other five groups
XPEHH_BIN_BTA XPEHH value - Bos indicus vs Bos taurus
-   Selection Statistics based on Allele Frequency Spectrum    
Hp_IN Hp value - Indian indicine
Hp_CN Hp value - Chinese indicine
Hp_EA Hp value - East Asian taurine
Hp_EUA Hp value - Eurasian taurine
Hp_EUR Hp value - European taurine
Hp_AFR Hp value - African taurine
Hp_BIN Hp value - Bos indicus
Hp_BTA Hp value - Bos taurus
-   Descriptive Statistics    
Pi_IN Pi value - Indian indicine
Pi_CN Pi value - Chinese indicine
Pi_EA Pi value - East Asian taurine
Pi_EUA Pi value - Eurasian taurine
Pi_EUR Pi value - European taurine
Pi_AFR Pi value - African taurine
Pi_BIN Pi value - Bos indicus
Pi_BTA Pi value - Bos taurus