Schema for Cattle Ensembl Genes - Ensembl Gene Predictions for cross-species cattle (UMD3.1) |
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Database: Goat Primary Table: Cattle_Ensembl_Genes Data last updated: 2018-01-02
Big Bed File: /gbdb/Goat/gene/cross_species/Ensem/cattle/UMD3.1.gene.bb
Item Count: 20,170
Format description: Cross-species annotation for Goat_new using alignments and liftOver
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold(UMD3.1:GCA_000003055.3) | | chromStart | 105114951 | Start position in chromosome | | chromEnd | 105115049 | End position in chromosome | | name | ENSBTAT00000060587 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | + | + or - for strand | | thickStart | 105114951 | Start of where display should be thick (start codon) | | thickEnd | 105114951 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of exon | | blockSizes | 98, | Comma separated list of exon sizes | | chromStarts | 0, | Start positions relative to chromStart | | geneID | ENSBTAG00000043595 | Gene stable ID | | geneSymbol | U6 | Gene Symbol | | searchText | ENSBTAT00000060587(U6) | Search Text |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneID | geneSymbol | searchText |
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| 1 | 105114951 | 105115049 | ENSBTAT00000060587 | 0 | + | 105114951 | 105114951 | 0 | 1 | 98, | 0, | ENSBTAG00000043595 | U6 | ENSBTAT00000060587(U6) |
| 1 | 105425835 | 105454116 | ENSBTAT00000024606 | 0 | - | 105425932 | 105440495 | 0 | 5 | 996,72,90,369,143, | 0,2251,5621,14299,28138, | ENSBTAG00000018489 | OTOL1 | ENSBTAT00000024606(OTOL1) |
| 1 | 105615585 | 105615816 | ENSBTAT00000063595 | 0 | + | 105615585 | 105615816 | 0 | 1 | 231, | 0, | ENSBTAG00000047250 | SPTSSB | ENSBTAT00000063595(SPTSSB) |
| 1 | 105708669 | 105742963 | ENSBTAT00000021594 | 0 | - | 105709939 | 105742265 | 0 | 16 | 1401,71,107,73,113,146,118,97,79,91,129,81,97,135,56,123, | 0,1838,3174,4630,5476,11219,12275,14540,15313,23432,23949,24807,30278,32335,33552,34171, | ENSBTAG00000016228 | NMD3 | ENSBTAT00000021594(NMD3) |
| 1 | 105919723 | 105920719 | ENSBTAT00000064763 | 0 | + | 105919723 | 105920719 | 0 | 1 | 996, | 0, | ENSBTAG00000046104 | B3GALNT1 | ENSBTAT00000064763(B3GALNT1) |
| 1 | 105948228 | 106272500 | ENSBTAT00000053250 | 0 | - | 105948228 | 106272500 | 0 | 4 | 347,162,175,399, | 0,3892,93513,323873, | ENSBTAG00000001274 | PPM1L | ENSBTAT00000053250(PPM1L) |
| 1 | 106359939 | 106360518 | ENSBTAT00000023031 | 0 | - | 106359939 | 106360518 | 0 | 1 | 579, | 0, | ENSBTAG00000017322 | ARL14 | ENSBTAT00000023031(ARL14) |
| 1 | 106451459 | 106510757 | ENSBTAT00000023150 | 0 | + | 106451459 | 106510757 | 0 | 17 | 69,45,90,30,53,96,86,87,170,45,131,129,105,72,163,95,99, | 0,30052,30938,31131,31258,34400,35010,36599,38230,38509,41240,44783,47686,50449,54869,57737,59199, | ENSBTAG00000017416 | KPNA4 | ENSBTAT00000023150(KPNA4) |
| 1 | 106496589 | 106496922 | ENSBTAT00000062708 | 0 | + | 106496589 | 106496589 | 0 | 1 | 333, | 0, | ENSBTAG00000045275 | SCARNA7 | ENSBTAT00000062708(SCARNA7) |
| 1 | 106564943 | 106577253 | ENSBTAT00000010623 | 0 | + | 106576170 | 106577253 | 0 | 3 | 61,74,1086, | 0,137,11224, | ENSBTAG00000008078 | TRIM59 | ENSBTAT00000010623(TRIM59) |
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