Schema for Cattle NCBI Genes - NCBI Gene Predictions for cross-species cattle (UMD3.1.1) |
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Database: Goat Primary Table: Cattle_NCBI_Genes Data last updated: 2018-01-02
Big Bed File: /gbdb/Goat/gene/cross_species/NCBI/cattle/UMD3.1.1.gene.bb
Item Count: 47,737
Format description: Cross-species annotation for Goat_new using alignments and liftOver
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold(UMD3.1.1:GCA_000003055.5) | | chromStart | 105334761 | Start position in chromosome | | chromEnd | 105334833 | End position in chromosome | | name | rna1481 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | - | + or - for strand | | thickStart | 105334761 | Start of where display should be thick (start codon) | | thickEnd | 105334761 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of exon | | blockSizes | 72, | Comma separated list of exon sizes | | chromStarts | 0, | Start positions relative to chromStart | | geneSymbol | TRNAW-CCA | Gene Symbol | | searchText | rna1481(TRNAW-CCA) | Search Text |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneSymbol | searchText |
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| 1 | 105334761 | 105334833 | rna1481 | 0 | - | 105334761 | 105334761 | 0 | 1 | 72, | 0, | TRNAW-CCA | rna1481(TRNAW-CCA) |
| 1 | 105425835 | 105454116 | NM_001192604.1 | 0 | - | 105425932 | 105440495 | 0 | 5 | 996,72,90,369,143, | 0,2251,5621,14299,28138, | OTOL1 | NM_001192604.1(OTOL1) |
| 1 | 105526740 | 105625314 | XR_804430.2 | 0 | - | 105526740 | 105526740 | 0 | 3 | 432,102,193, | 0,10577,98381, | LOC104970981 | XR_804430.2(LOC104970981) |
| 1 | 105587777 | 105617122 | NM_001110774.1 | 0 | + | 105615585 | 105615816 | 0 | 3 | 107,94,1569, | 0,11091,27776, | SPTSSB | NM_001110774.1(SPTSSB) |
| 1 | 105625533 | 105627380 | gene779 | 0 | + | 105625533 | 105625533 | 0 | 4 | 17,64,217,546, | 0,96,648,1301, | LOC100138306 | gene779(LOC100138306) |
| 1 | 105708669 | 105742963 | NM_001075420.2 | 0 | - | 105709939 | 105742265 | 0 | 16 | 1401,71,107,73,113,146,118,97,79,91,129,81,97,135,56,123, | 0,1838,3174,4630,5476,11219,12275,14540,15313,23432,23949,24807,30278,32335,33552,34171, | NMD3 | NM_001075420.2(NMD3) |
| 1 | 105708669 | 105744704 | XM_010801404.2 | 0 | - | 105709939 | 105742265 | 0 | 16 | 1401,71,107,73,113,146,118,97,79,91,129,81,97,135,56,73, | 0,1838,3174,4630,5476,11219,12275,14540,15313,23432,23949,24807,30278,32335,33552,35962, | NMD3 | XM_010801404.2(NMD3) |
| 1 | 105847670 | 105872581 | gene782 | 0 | - | 105847670 | 105847670 | 0 | 5 | 660,513,116,141,71, | 0,2235,2937,21292,24840, | LOC100336549 | gene782(LOC100336549) |
| 1 | 105889532 | 105922567 | XM_010801419.2 | 0 | + | 105919723 | 105920719 | 0 | 6 | 176,89,63,94,21,2917, | 0,3878,21109,25691,26641,30118, | B3GALNT1 | XM_010801419.2(B3GALNT1) |
| 1 | 105889841 | 105922567 | XM_005201750.3 | 0 | + | 105919723 | 105920719 | 0 | 6 | 109,89,63,94,21,2917, | 0,3569,20800,25382,26332,29809, | B3GALNT1 | XM_005201750.3(B3GALNT1) |
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