Schema for miRBase & miRTarBase - miRNA information provided by miRBase and miRTarBase |
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Database: Oar_v4_0 Primary Table: miRBase_miRTarBase Data last updated: 2019-01-06
Big Bed File: /gbdb/Oar_v4_0/miRNA/new/oar.Oar_v4.0.miRNA.bb
Item Count: 154
Format description: miRNA information provieded by miRBase and miRTarBase
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold (Oar_v4.0:GCA_000298735.2) | | chromStart | 15038298 | Start position in chromosome | | chromEnd | 15038403 | End position in chromosome | | name | oar-miR-30c | Name of transcript | | score | 0 | Score from 0-1000 | | strand | + | + or - for strand | | thickStart | 15038323 | Start of where display should be thick (start codon) | | thickEnd | 15038344 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of exon | | blockSizes | 105, | Comma separated list of exon sizes | | chromStarts | 0, | Start positions relative to chromStart | | Description | null | miRNA Description |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | Description |
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| 1 | 15038298 | 15038403 | oar-miR-30c | 0 | + | 15038323 | 15038344 | 0 | 1 | 105, | 0, | null |
| 1 | 138651621 | 138651705 | oar-let-7c | 0 | - | 138651673 | 138651695 | 0 | 1 | 84, | 0, | null |
| 1 | 138652382 | 138652463 | oar-miR-99a | 0 | - | 138652431 | 138652451 | 0 | 1 | 81, | 0, | null |
| 1 | 224971190 | 224971283 | oar-miR-16b | 0 | - | 224971247 | 224971267 | 0 | 1 | 93, | 0, | null |
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